I've tried installing the following packages but have received the same error, "installation of package X had non-zero exit status". You mention 20.04 in the title, but then report your release as 14.04 via tag? # Write you. This function can install multiple packages with their dependencies using https://cran.rstudio.com/: This is what I finally could do for installing psych package in R-3.4.1 when I got the same warning, 2:downloaded it manually having tar.gz extension, 3:Chose the option "Package Archive File (.zip;.tar.gz)" for install packages in R, 4:browsed locally to the place where it was downloaded and clicked install. Post questions about Bioconductor Documentation: Reference manual: locfit.pdf Downloads: Reverse dependencies: Linking: Please use the canonical form https://CRAN.R-project.org/package=locfitto link to this page. Author: Yunshun Chen, Aaron TL Lun, Davis J McCarthy, Matthew E Ritchie, Belinda Phipson, Yifang Hu, Xiaobei Zhou, Mark D Robinson, Gordon K Smyth, Maintainer: Yunshun Chen , Gordon Smyth , Aaron Lun , Mark Robinson . <@> DNA IlluminaHumanMethylation450k.db BiocManager"is not available". I had the same issue. rev2023.3.3.43278. Bulk update symbol size units from mm to map units in rule-based symbology. Did any DOS compatibility layers exist for any UNIX-like systems before DOS started to become outmoded? You didn't look in the right repository, Next, you should check to see if the package is available. How Intuit democratizes AI development across teams through reusability. To verify the proper installation of Cairo: Have a question about this project? The nature of simulating nature: A Q&A with IBM Quantum researcher Dr. Jamie We've added a "Necessary cookies only" option to the cookie consent popup, Announcement: AI-generated content is now permanently banned on Ask Ubuntu, Unmet dependencies when trying to install r-base, Failing to install mclust R package on Ubuntu 16.04, Permission denied while installing R package "ps", Unable to complete pdftools installation Ubuntu 18.04 for R supporting readtext, I can't install packages with conda, even so anaconda was correctly installed? Is the God of a monotheism necessarily omnipotent? How to install 'Rcpp, package? How to view hierarchical package structure in Eclipse package explorer, How to unload a package without restarting R. How to find out which package version is loaded in R? Learn more about Teams Not the answer you're looking for? For some reason, the package was still there, but install.packages was only looking at the updated (and incompatible) version. Why does Mister Mxyzptlk need to have a weakness in the comics? Thank you for your response; How can I type the code in console for this installation? Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Ubuntu and the circle of friends logo are trade marks of Canonical Limited and are used under licence. Usually stated dependency on R version is there for a reason, it may be wise to check what such change will potentially break. Not the answer you're looking for? Will Gnome 43 be included in the upgrades of 22.04 Jammy? https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages, https://stackoverflow.com/questions/1474081/how-do-i-install-an-r-package-from-source. Configuration failed to find the --static freetype2 library. OOOh really! A concrete example: the latest CRAN version of package rattle for data mining, 5.3.0, does not support R version 3.4 because it had a big update between package versions 5.2.0 (R >= 2.13.0) and 5.3.0 (R >=3.5). Disconnect between goals and daily tasksIs it me, or the industry? By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. One thing that happened for me is that the version of R provided by my linux distribution (R version 3.0.2 provided by Ubuntu 14.04) was too old for the latest version of the package available on CRAN (in my case, plyr version 1.8.3 as of today). It's incredible but my solution was to restart R and try again. The first thing to test is have you spelled the name of the package correctly? Such a relief reading it now! Would the magnetic fields of double-planets clash? BEGIN If the package requires compiling code (e.g. How would "dark matter", subject only to gravity, behave? Package bigmemory not installing on R 64 3.0.2 Running the command sudo dpkg-query -l | grep libcairo2-dev also shows that the Cairo package is fully installed. I got "package is not available", package dataset is not available (for R version 3.1.1), "package rhipe is not available (for R version 3.1.2)", https://cran.r-project.org/src/contrib/Archive/, cran.r-project.org/bin/linux/ubuntu/README, https://support.rstudio.com/hc/en-us/articles/200488488-Configuring-R-to-Use-an-HTTP-or-HTTPS-Proxy, How Intuit democratizes AI development across teams through reusability. Any other solutions? Please what could be a reason for this error? hello, thanks for helping! I suggest using Hadley Wickham's devtools package. Install the package devtools if you don't have it (it includes package remotes) and then install the specific version that will work in your current R. You can look up that information on the CRAN page for the specific package archives. R. Please clarify. Will Gnome 43 be included in the upgrades of 22.04 Jammy? Learn more about Stack Overflow the company, and our products. Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. @laresbernardo this will resolve itself in 24-48 hours when the macOS binary of textshaping is available. package is not available (for R version 2.15.2) enter citation("edgeR")): To install this package, start R (version Making statements based on opinion; back them up with references or personal experience. An alternative is to install from the GitHub CRAN mirror. In .inet_warning(msg) : RHIPE on the other hand isn't in a CRAN-like repository and has its own installation instructions. Equivalently for Bioconductor packages, you may need to update your Bioconductor installation. Already on GitHub? Will Gnome 43 be included in the upgrades of 22.04 Jammy? By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Differential expression analysis of RNA-seq expression profiles with biological replication. EconomiCurtis closed This topic has been closed. Otherwise, you will need to set up Rtools in order to install from source. "After the incident", I started to be more careful not to trip over things. rev2023.3.3.43278. Another possible warnings message you may get when interacting with CRAN mirrors is: Warning: unable to access index for repository Which may indicate the selected CRAN repository is currently be unavailable. "4.2") and enter: For older versions of R, please refer to the appropriate That's only for bioconductor packages, and this is also the way bioconductor packages have to be installed. ==================================================, to the PKG_CONFIG_PATH environment variable, --------------------------- [ANTICONF] --------------------------------. @Anirban166 you appear to be compiling all these packages from source; you'll find life much easier if you instead install binaries. If you are behind a proxy server check the configuration using Sys.getenv("http_proxy") within R. Recovering from a blunder I made while emailing a professor, How to tell which packages are held back due to phased updates. Asking for help, clarification, or responding to other answers. That was meant to control the source of packages for layman users, but as a developer, you can in most cases change that by: If you know what you are doing and may need more than one package that might not be available in your system's CRAN, you can set this up in your project .Rprofile. Find centralized, trusted content and collaborate around the technologies you use most. Unfortunately, it seems that I'd have to replicate the process for other packages with non-zero status as well: I wonder if these interdependencies can be resolved within R? Staging Ground Beta 1 Recap, and Reviewers needed for Beta 2, Unable to install packages in latest version of RStudio and R Version.3.1.1, package pbkrtest is not available (for R version 3.2.2), R packages rgdal / rgeos "is not available (for R version 3.1.1)". apt or yum). privacy statement. Why do many companies reject expired SSL certificates as bugs in bug bounties? Making statements based on opinion; back them up with references or personal experience. Try installing: * deb: libfontconfig1-dev (Debian, Ubuntu, etc), If --static freetype2 is already installed, check that, PATH and PKG_CONFIG_PATH contains a --static freetype2.pc file. Otherwise, you can use pak::pkg_system_requirements() to get an up-to-date list of system deps. beyond top level package error in relative import. Since this is a large matrix, you may wish to use the data viewer to examine it. Install from local (i.e. (as lib is unspecified) Sometimes the package maintainer may show R version gaps that it does not support. I got "package is not available" Why do small African island nations perform better than African continental nations, considering democracy and human development? Alternatively, the list of available packages can be seen in a browser for CRAN, CRAN (extras), Bioconductor, R-forge, RForge, and GitHub. Do you maybe have the code for me. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Installation instructions to use this --> install_logs_.md. Stack Exchange network consists of 181 Q&A communities including Stack Overflow, the largest, most trusted online community for developers to learn, share their knowledge, and build their careers. Done Building dependency tree Reading state information. How to import local packages without gopath. The solution was suggested by a friend, however, I haven't been able to find it in any of the forums, hence submitting this answer for others. Is the bigvis package for R not available for R version 3.0.1? To learn more, see our tips on writing great answers. Recovering from a blunder I made while emailing a professor. privacy statement. I don't have any problem resorting to brew, but this does seem a bit off-track. Connect and share knowledge within a single location that is structured and easy to search. pinky1: ERROR: dependency 'locfit' is not available for package 'TSA' The locfit package (which is a package dependency) requires R >= 3.5 and since you are using an even older R version, you would have to update R to be able to install it. Already on GitHub? Edit (04/08/2020): I recently had an issue with a package (XML) reportedly not available for my R version (3.6.3, latest supported on Debian stretch), after an update of the package in CRAN. The solution was to use the packaging system of my distribution instead of trying to install from R (apt-get install r-cran-plyr got me version 1.8.1 of plyr). The workaround is to set repository manually: This solution might break R but here is an easiest solution that works 99% of time. Can carbocations exist in a nonpolar solvent? from the parent directory of DESCRIPTION) e.g. Did this satellite streak past the Hubble Space Telescope so close that it was out of focus? How to use Slater Type Orbitals as a basis functions in matrix method correctly? 10. What OS & release are you using?
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